rs30088482 SNP Detail

Summary

• ID
  rs30088482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51227040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTGCCA GAGTCAATCT
  CTTCTTCCAC CACGTGTGTC CTGGGCACAC AAGTCTTGAG GCCTGACGAA AGAGGTGTTA
  CAAGCCAGGC CATCTTGGCA GCTCTGTTCA CACTTTGTGT TAGCAGAAAC AAACAACCAT
  TTCACTTCAA AGAATTGAGA CCTCTTTGTG TCACCAGCCT TTGTGTGAAG AATAGCTGAG
  Y
  GGGCTGACCC CATCCACAGC ACTGACCCCC GCTTTCCGAG GGGAAAGTGT GCTTCTTTGT
  TAGAGTCTTT TCTTTCTCTC TTAAGGCAGT GTCTCAATAT TGTCTGTTCA AGCCATCGCT
  TGCTTTGGTT GGTTGGGTTG GGTTGAGCTT TTTCCCAGAG TTTCTCCATG TAGTCCAGGC
  TATCCTAGAA CTAGCAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598548	NES12913603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30088482					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598548	NES12913603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51227040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576268	regulatory region 576268			1370 bp distal