rs30087609 SNP Detail

Summary

• ID
  rs30087609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37728968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTTGGAG GGAAAGGAAG GCAGGGTCCC AGGGATGGCT
  GCCTCTGAGG TGAGGGTAGG GTGAGAGAAG AGAGGAGGGC AGAAGTGAAG ACAAAAAGAA
  R
  AGTTTACAAT CATCATGAGG CAAATAAGGC AGGCAGGCAG GCAGGCAGGC AGGCAGGCAG
  ACTGCTTGGG GTGGAGGACC GATGTTTGAA GGCTTGAGGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46913192	NES10828082	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30087609					SNP	A	G	G	A	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913192	NES10828082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37728968 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	398 bp downstream
Rr406863	regulatory region 406863	743 bp distal
Rr575537	regulatory region 575537	1369 bp distal
Rr575538	regulatory region 575538	561 bp distal
Rr575539	regulatory region 575539	156 bp proximal