rs30087344 SNP Detail

Summary

• ID
  rs30087344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51340302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGTATT ATTTAATAGA
  AACTACTTTG AAAGTCTTTG CTGCCTCTGT CTTCATATCT ATTTTTATAT TGCCATTAAT
  TTGTTAATCC TATAGGCCCT GGGTCACTTT CCATCTAGTA GCATTGTCTT TTCTTCGTAA
  CTTAGATACA GTAGACAGTT GAGTGAGTGG ATCCTGCTGC CTTTATTAAC AGAATTTTGT
  Y
  TTGGTGGGCA ATTGGGCTGC ATTAGCATGT TCTTTTCATG ATTACTTTTA TTTTTAAACT
  TAGAAAAAAA ATTTTTGTGT GTAGCTCTGG GCATCCTGGA ACTAGCTCAA TAGACCAGGC
  TGGCCTTAAA CAACTTTTTT CAGTCTTTCG AGGCAGGGTT TCCCCGTGTA GCCTTGTTTT
  GGAGCTCACT CTGTAGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49598134	NES12925241	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30087344					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598134	NES12925241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51340302 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576318	regulatory region 576318			1203 bp proximal
Rr576319	regulatory region 576319			1630 bp proximal