rs30086685 SNP Detail

Summary

• ID
  rs30086685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37742343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCG GTCATAGAGG GCATAGCACC
  R
  ACTTTGTGAA GGGTCGCTGG TGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46913465	NES10827048	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	A	G	A	G	A	A		A	A	A		G
ss134811122	ENSMUSSNP4994973	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G						G
ss320711772	CHEV_3_37587116	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30086685					SNP	G	G	G	A	A	G	A	G	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913465	NES10827048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37742343 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	452 bp upstream
Rr575540	regulatory region 575540	943 bp distal
Rr575541	regulatory region 575541	1023 bp distal
Rr575542	regulatory region 575542	463 bp distal
Rr575543	regulatory region 575543	270 bp distal