rs30084224 SNP Detail

Summary

• ID
  rs30084224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56019572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGATA TAACTTCAGG
  CTTCTCACTG CTAAGATTTA ACCTTTGGCT TCTGGACCTT TTTGGAGTCT TGCTTAATTT
  CCAGAAAGAA AAAAAATTTA AATGGTCCAT ATAAACTTTG CTAGGCTACT ACAAAGAATA
  CCTGCAAAAG CACTGGTAAG CAGCATCCAG GGGGGCCTGA AACATGGGAT TGGAACTTGT
  Y
  GGTAAGGCCA TGTTCTTTAT CCCATTGGTT GAAGGTAGCC TGCTGCTTGG GCTCTCCAGG
  GAAATGGCTG CCAGCAGGCA CGGGTGGGAA TCTGGTACGG GATGGTTCAG ATTGAGTAGA
  TTCTTTTGTT CCTCATCACA CATTTTGCCG TGGCAATGAA GCCAGATTCC ATAAAAAGAT
  AACTCCCAAT CGGTTTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45893969	mCV24833518	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss47922920	NES11661953	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	T	T	C	T	T	C
ss133220274	ENSMUSSNP5446733	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30084224					SNP	T	T	C	C	C	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922920	NES11661953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56019572 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	1686 bp proximal