rs30083410 SNP Detail

Summary

• ID
  rs30083410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108816860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CTAATTCCAG CACTCTGGAG
  R
  CTGAGGCATA AAGATGGTCA CCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45893965	mCV24063871	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss133510258	ENSMUSSNP3268098	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321894219	CHEV_6_108789893	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30083410					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108816860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368141	regulatory region 368141			117 bp downstream
Rr636221	regulatory region 636221			1516 bp distal
Rr636222	regulatory region 636222			within coordinates
Tssr58120	transcription start site region 58120			677 bp downstream