rs30082657 SNP Detail

Summary

• ID
  rs30082657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37612506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAAAAT TTAAACCATT
  GAGCCCATTC ATAGCTTTCT TTGGCTACGT GTCACTCTTC AACCACAGGT CAGACACACC
  AGTGTCAATA CTACAGTGTA GACACACCAG TGTGGCTGCT TATCTTTTCT GACTGCCAGA
  GCCTGAGAAG CTTAGAGAGC TGCAAACAAG CATAGTTGGA AAACTACTTC GGTCCTGTCA
  R
  GCTGCTTTTG ACCCCTTTGA AGGTAGTCTG TCCTTTGCTA CTTCTGTCTT TACAAAGACC
  AACTTTGCAG AATACCACCT GCACATCATG ATGGTCCTTA AGTTCAGGCC CTAAAGTCTG
  ATGTTGCTCA GCACCCAGCA CCTGCCTTCT CATCTAGCTC AGGGCTGTCT GGTGGACTAA
  GTAGAGAATA GTCACTGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46912082	NES10833967	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30082657					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46912082	NES10833967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37612506 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Gm12564	predicted gene 12564			1854 bp upstream
Rr575504	regulatory region 575504			1004 bp distal
Rr575505	regulatory region 575505			within coordinates
Rr575506	regulatory region 575506			894 bp proximal