rs30082400 SNP Detail

Summary

• ID
  rs30082400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37604383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGAAAC GGTAATTAGA
  TTCCCAGTAA ATACCCCATG ATCTGACAGA CTATCTGGTA ATGAAAGATC ATTCCTTAAT
  GAATGACTAT GAAACAGAAA TTCAGAACAT AGAGCCATCC GTCTGTTTGA GCAGATCCCA
  AGCAGCACTG ATCTGAGACA GTGGCCACCG TCATACTTAC TGATGCTCTT AATTTTTAGT
  R
  AGAAGAATCC TAAAGAGAGT GACCATCTAA TGGTTAGGGG ACAAACATAT TCCATATACT
  TCTGCACTGC CACTCAGGCT AGCTGTGGAG GGCGGGGTTA GTTGCTGTTT TGTGTAGTAC
  AGATATCTGC CCTCACAGCC AAGTGTGCTG GAAACTGTTT TGGTTGAATT GTGGTTTTCT
  GTGCAATACT TTTGTTCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911989	NES10796734	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30082400					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911989	NES10796734	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37604383 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
D3Ertd740e	DNA segment, Chr 3, ERATO Doi 740, expressed			899 bp distal
Rr575499	regulatory region 575499			415 bp distal
Rr575500	regulatory region 575500			within coordinates
Rr575501	regulatory region 575501			463 bp proximal