rs30082005 SNP Detail

Summary

• ID
  rs30082005
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37729918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AGTTGTTGGG CTCAGAGAGA
  R
  AGGAACACAT TGAGTGGAGT CAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45485307	mCV22777473	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G
ss46913225	NES10828104	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A	A		A	A	G	G		G	A	A		A
ss134810715	ENSMUSSNP5558712	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss320711651	CHEV_3_37574691	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30082005					SNP	A	A	A	A	G	A	A	G	A	A	G	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913225	NES10828104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37729918 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	1348 bp downstream
Rr406863	regulatory region 406863	1693 bp distal
Rr575538	regulatory region 575538	1511 bp distal
Rr575539	regulatory region 575539	81 bp distal