rs30081061 SNP Detail

Summary

• ID
  rs30081061
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110250360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACCTGACCA CTTCACCAGC AGTTGTAATG TTGAAGCCTT TTTCAAAATC AGATTTTTGG
  GCCCTGAGAT GGTTTGGTGG TTTGAAGGGA CCCTGGGACC CACATGGTGG AGAGATCTGA
  CTTCCACAGC TGTTCTCTAA CTTCTGTAGA CATTACTCTC ACACAACCCA AGTAATCAAA
  GGAAAAAAAA AAAGATTCTC TTTAATACCC TTTCTTACTA TAAATTATTG CAATATCTCA
  CTACAACAGC ATCATGTGGC TCAGTGATAG AGTCTTATTT AGCATGTACC TGGTGCCCCC
  M
  CCAAAAAAAA AAAAAAAAAA AAAAAAGAAG AAAAAGAAAA AGAAAAAAAG AAGATGATGC
  TGTTTAAAGA CAGAACCAGA AAATTTTTAA AATGTTCTTT TTACCATTCA CATTTAAAGT
  AGTGGTTAAA TTTACTGACT CATGACCCAG GAACAGGCAT TGCCTGTTGA CATGGCTTCA
  CCCACCATCT TCAATAGACA TGGTTTTCTT TGGGAACGAT AACTTATGGT TACCTCTCCT
  GTAATCATCT ATGTGCATGT CCTGCCGTTT ATATTAATGG GTGTGCATCT GTTCCTCCCA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46371226	mCV25057603	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30081061					SNP	C	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110250360 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	Intron
Tssr3020	transcription start site region 3020	403 bp downstream
Tssr3021	transcription start site region 3021	within coordinates
Tssr3022	transcription start site region 3022	440 bp downstream
Tssr3023	transcription start site region 3023	1076 bp downstream
Tssr3024	transcription start site region 3024	1099 bp downstream
Tssr3025	transcription start site region 3025	1178 bp downstream
Tssr3026	transcription start site region 3026	1234 bp downstream
Tssr3027	transcription start site region 3027	1317 bp downstream
Tssr3028	transcription start site region 3028	1395 bp downstream
Tssr3029	transcription start site region 3029	1410 bp downstream
Tssr3030	transcription start site region 3030	1431 bp downstream
Tssr3031	transcription start site region 3031	1604 bp downstream
Tssr87360	transcription start site region 87360	1483 bp downstream
Tssr87361	transcription start site region 87361	1430 bp downstream
Tssr87362	transcription start site region 87362	1175 bp downstream
Tssr87363	transcription start site region 87363	459 bp downstream
Tssr87364	transcription start site region 87364	408 bp downstream
Tssr87365	transcription start site region 87365	374 bp downstream
Tssr87366	transcription start site region 87366	401 bp upstream
Tssr87367	transcription start site region 87367	418 bp upstream
Tssr87368	transcription start site region 87368	974 bp upstream
Tssr87369	transcription start site region 87369	999 bp upstream
Tssr87370	transcription start site region 87370	1032 bp upstream
Tssr87371	transcription start site region 87371	1071 bp upstream
Tssr87372	transcription start site region 87372	1127 bp upstream
Tssr87373	transcription start site region 87373	1157 bp upstream
Tssr87374	transcription start site region 87374	1198 bp upstream
Tssr87375	transcription start site region 87375	1216 bp upstream
Tssr87376	transcription start site region 87376	1238 bp upstream
Tssr87377	transcription start site region 87377	1246 bp upstream
Tssr87378	transcription start site region 87378	1296 bp upstream
Tssr87379	transcription start site region 87379	1346 bp upstream
Tssr87380	transcription start site region 87380	1559 bp upstream
Tssr91614	transcription start site region 91614	1329 bp upstream
Tssr91615	transcription start site region 91615	1295 bp upstream
Tssr91616	transcription start site region 91616	418 bp upstream
Tssr91617	transcription start site region 91617	393 bp upstream
Tssr91618	transcription start site region 91618	373 bp upstream
Tssr91619	transcription start site region 91619	1013 bp downstream
Tssr91620	transcription start site region 91620	1117 bp downstream
Tssr91621	transcription start site region 91621	1212 bp downstream
Tssr91622	transcription start site region 91622	1254 bp downstream
Tssr91623	transcription start site region 91623	1716 bp downstream