rs30080762 SNP Detail

Summary

• ID
  rs30080762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18416823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTGGTT CAACCTTCTC
  TCTAGCAGCT GCTGTTAGAA GTAATGGCTG ATACATATGC AGCTAGAGTC AAGAGCTCCG
  GGGTACTGGT TAGTTCATAA TGTTGTTCCA CCTATAGGGT TGCAGATCCC TTTAGCTTCT
  TGGCTACTTT CTCTAGCTCC TCCATTGGCC TAGTCAGCCA TCACTGGAAA GAGAGGCCCA
  Y
  TGGACACGCA AACTTTATAT GCCCCAGTAC AGGGGAACGC CAGGGCCAAA AAGGGGGAGT
  GGGTGGGTAG GGGAGTGGGG GTGGGTGGGT ATGGGGGACT TTTGGTATAG CATTGGAAAT
  GTAAATGAGC TAAATACCTA ATAAAAAATG GAAAAAAAAA AAAAAAGAAG TAATGGCTGA
  GCAAATGTAA CCACAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45893758	mCV23959692	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30080762					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18416823 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			1229 bp upstream
Rr626921	regulatory region 626921			1075 bp proximal