rs30080199 SNP Detail

Summary

• ID
  rs30080199
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37569476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTCAT ATTGTACATT
  TTTGTGCAAT AATATGAATT CTTCATTTTC ATGAACAGGG TGTGTGTGTA TATGTATATT
  GTAAAAATCT GCTGTCATTG GTTCTTCATA TACTTACACC AATTAGATAT ATGTTAAAAT
  ACTTCAAAAG GCTTTAAATA TAGCGTCTTC TTAGCCAGCA CAGCCATTTG ACAGAAACAG
  M
  CCATAGGTTT GCAACAGGCA ATCCACTGCC AGAAGCTTCT GGTTCTGTAT TCCACGAATT
  AAGATTGTTG CCTATACTAT TAAGCTCACA CATTTAGAAA TGGTAAAATG TGTACAGATA
  ACTTACATTC CTAATATTTT ATATTTCTTA TAAAAGACAG AGGAGATCCT GCAGCTTTGA
  ATCTGCAGGA TTGGCCTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911659	NES10798584	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30080199					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911659	NES10798584	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37569476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575494	regulatory region 575494			212 bp proximal
Rr575495	regulatory region 575495			296 bp proximal
Rr575496	regulatory region 575496			401 bp proximal