rs30080178 SNP Detail

Summary

• ID
  rs30080178
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37523662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATGAGG GGAATAGGGG
  CACAGAGATA AGGATGTAAT AAATAATAGA TAAAATTATA TCAATACATT TGATCAGTAA
  GAAAATACTC TTAAACAACA ACAACAACAA CAAAAAACAT CTTAAATTGA AACAACTTAA
  AAATAAAACG TTAGCAAGTC AGGTGGAGGC AAGGCTTTGT ACTCCTCAGT TCCTCTCCAA
  M
  GTTTGATTAT CTCAGACAAC ACATTTCCCC AGACCTCCCA TCACCCCTCG CCTACTGAGT
  TCAAAGCTAC ATCTACAAGG AGGGCACCTT CTTTCCAACT ATACTAGCTG GTGTTCAGTT
  CTTCTTTAGG AAGATACCTG TACTGTTGTT GTATTGGGCT AGAAATTTTA ACAATTCTTT
  AGTAACGTAA GTCAGCTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911101	NES10797217	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30080178					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911101	NES10797217	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37523662 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	1139 bp distal
Rr575485	regulatory region 575485	758 bp distal
Rr575486	regulatory region 575486	within coordinates