rs30079861 SNP Detail

Summary

• ID
  rs30079861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:5406157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGAT TCATAATTAT TTCCCTCCAG
  Y
  GTGATGAAAG CATTCCCCCA CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45893364	mCV23815018	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss321728976	CHEV_6_5356157	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30079861					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5406157 () rs orientation: forward

Symbol	Name	Function Class
Asb4	ankyrin repeat and SOCS box-containing 4	Intron
Rr626141	regulatory region 626141	1782 bp distal
Rr626142	regulatory region 626142	915 bp distal
Rr626143	regulatory region 626143	1918 bp proximal