rs30079428 SNP Detail

Summary

• ID
  rs30079428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130508775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA ACTAGCGGAA GCCTTCCGCC
  R
  TGTCTCCTGT AGATTTGAGT TCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45393665	mCV22791284	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss135898403	ENSMUSSNP3278927	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss320966226	CHEV_3_130418044	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30079428					SNP	A	A	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130508775 () rs orientation: forward

Symbol	Name	Function Class
Rr398018	regulatory region 398018	164 bp upstream
Rr585199	regulatory region 585199	790 bp distal
Rr585200	regulatory region 585200	within coordinates