rs30078935 SNP Detail

Summary

• ID
  rs30078935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56488416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCTGCA TGATCATAGT
  TTTCTGTCCC CATTGTCCGT AGTACAGAAA TGGATCCATT CGCTGGGCTG ACTTCTCAGA
  AGGGAGACCA AACTCCCAAT GAAGTTCTGG AAAATTTCTA TCACACAAGT CTGCAGGAAT
  CAGCCCGCGT ATCAGTGACA GCCTGACAGC CTGGAAAGTC ACCAGAGCCA CCGCAATAGC
  Y
  CAGCCTGCAG AGCAGATGGA GCCTGAAGCG CTCACCCTAG AACCATCGTC CAAAGCAACT
  GCGCACACAG TAGCCAAGAC TTCAGATGTT GGGCTCTGCT CCAGTTTTCA ACGCCTGTTA
  CCCTGGAGGT TGAGCAACAC CATGCCCATA AACAGAGAAA CATGTGTGCT GTGACTTGCC
  AATCCGGGCC GTGTGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39148503	mCV22866688	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss61809906	NES17750348	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		T	C	C	C	T	C	C	T	C
ss149043888	ENSMUSSNP5454218	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30078935					SNP	C	C	T	C	T	C	T	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809906	NES17750348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56488416 () rs orientation: forward

Symbol	Name	Function Class
4933404M09Rik	RIKEN cDNA 4933404M09 gene	627 bp upstream
Gm24716	predicted gene, 24716	1822 bp downstream
Rr480710	regulatory region 480710	within coordinates
Rr480711	regulatory region 480711	1924 bp proximal