rs30078131 SNP Detail

Summary

• ID
  rs30078131
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37528754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACATTGTC TCTAACAAAC AAACAAACAA ACAAACACCC
  CCTCTCCCAG GATTTCAGGA TTCAAAAGAA TCCTGAATGT TGAATGTTGG GTTTACAGAA
  W
  TTTATTAGGT CTTTGAAAGA TAAGAGAATA TAGGGCTGCT TACATACATG GTGATGTGAT
  GTATCAGTTT CTTGTTGCTG GGCTAAGTTC TTATCCTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46911176	NES10796840	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30078131					SNP	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911176	NES10796840	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37528754 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575487	regulatory region 575487	1859 bp distal
Rr575488	regulatory region 575488	1940 bp distal