rs30078102 SNP Detail

Summary

• ID
  rs30078102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37522056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGGTAC CATATGACCA
  AGATGACCGG GGTCAGAACA GTTGCTGTGA GAAGTAGTAG AATGGCTTAA AATTGACAAG
  AGACAATAAT GGTGGAACAG TTGGGGAGAC ATGCAGTGAA CTTAGCTTCT GTATTCATAA
  AAATTATTCA GCCCATCAGC TTTCTATGTT ATTTGAAAAT GTGTTAGACA GTCTGTTATG
  Y
  CATTAAAGTC TACAGTTTTA ATACTTTTTT CAGAAACAAA TAATAGTTAA GCATTCTAAA
  TTTACCCAAA TGAGTACCTT ATGTTTTGTG TTTTTAGTTT CATTGTAGCT ATGAGTTAAT
  GGGTTTTGTT TTCCTTTTGG ATACTACCTT CCTACTCTTC CTTATTGTTA CACGTTTTTT
  CAGTGTGGTA CTCACTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46911083	NES10797325	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	T	T	T	T	T	T	T	T	C
ss134806455	ENSMUSSNP5910680	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30078102					SNP	T	T	C	T	T	T	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46911083	NES10797325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37522056 () rs orientation: forward

Symbol	Name	Function Class
Afg2a	AFG2 AAA ATPase homolog A	Intron
Rr575484	regulatory region 575484	446 bp proximal
Rr575485	regulatory region 575485	827 bp proximal
Rr575486	regulatory region 575486	1539 bp proximal