rs30077222 SNP Detail

Summary

• ID
  rs30077222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135012083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTAGTG AATGAATGAA
  TGGAACAGTG GAGTTCCTAG AAAAAGTATC TACTCAGGAC CTCTAGGACC AAGTACCCAG
  CACAAAGATT TATTTGCTCC AGAGAAACAG AGGGCAGGGA GTAAGACTCA AAGATAGGAG
  ATAAAAGACA AGGGAGAGGG GGCAGGGATA TTTATCCCAG AAGGTGATCA AGGACTGCCT
  Y
  TGGATAGAGA GGTGACAGAT GTGGCATACA GGAAAATGGC AGTTTAAGGT ACAAGGGGAA
  ACCTCATGTT AGGATGAAGT GTTTAATTTT AATCAGGCAT GTTAATTAGA TGAACCGAAG
  GGGCTTTCAA TTGCTGGACT TCAATCCTTT GATAGTTGGA CCTTGGTAGT CAGCCTCAGG
  AGAAAGAAGT GGCCAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45393815	mCV23959690	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135924878	ENSMUSSNP4204260	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30077222					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135012083 () rs orientation: forward

Symbol	Name	Function Class
Bdh2	3-hydroxybutyrate dehydrogenase, type 2	1896 bp downstream
Gm46826	predicted gene, 46826	within coordinates
Rr585683	regulatory region 585683	1416 bp distal
Rr585684	regulatory region 585684	997 bp proximal
Rr585685	regulatory region 585685	1434 bp proximal
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	1000 bp upstream
Tssr31804	transcription start site region 31804	1359 bp upstream
Tssr31805	transcription start site region 31805	1389 bp upstream