rs30076309 SNP Detail

Summary

• ID
  rs30076309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121069074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGCTGT TACACATGAG
  ACCCCCAAGG ACTCACCCTG TCAGCATATT AAACAGTTGT ATTCTGAGGA AATTCAATTA
  AAACACCAAA GAAAAATGCT CGTACATTCA CAGTGGAAGC TCGGCCAGCG CTGTGCTGGC
  AGCAAAGATG AGGTAAGAGG AAGCCAGGTA GGTCAGAGCG AGTTCTAGAG ACCTGACCCA
  K
  GAGTTCTAAG TCTGAGGTCC AGCAGCAGCA TCCCCACAAA TCACACCAGC CGCCGTCTGC
  CCTTTTCTAG AAAGGCCGCC AGGAATTAAC CTTCAAATGG AAACTGTGAC CAGTGCAACT
  GCCAGATGAT ACTGAGGAGA AACTTCCAGA CACTGTGAGA AGACAAAACC CGTACCTGTA
  GCCGGGCGTG GTGGTGTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46370690	mCV24890762	ABI	CRAMUS_MOUSE	f	SNP		G	T						T
ss61237523	NES16854903	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	T	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30076309					SNP	G	G	T	T	T	G	T	T	?	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61237523	NES16854903	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121069074 () rs orientation: forward

Symbol	Name	Function Class
Rr688903	regulatory region 688903	1554 bp distal
Rr688904	regulatory region 688904	336 bp proximal
Rr688905	regulatory region 688905	460 bp proximal
Rr688906	regulatory region 688906	1883 bp proximal
Ulk4	unc-51-like kinase 4	Intron