rs30072731 SNP Detail

Summary

• ID
  rs30072731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33970238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT TTCAACTCCC CTCTGTACTG
  Y
  GCGGCAGTCC AGTGCGTTGC TACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45892154	mCV27578086	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C	C
ss51592398	NES14853083	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	T	C		C	T	T
ss133109700	ENSMUSSNP2344857	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30072731					SNP	T	T	C	C	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51592398	NES14853083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33970238 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	886 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	1131 bp distal
Rr628236	regulatory region 628236	402 bp distal
Tssr60221	transcription start site region 60221	1094 bp upstream
Tssr60222	transcription start site region 60222	927 bp upstream
Tssr60223	transcription start site region 60223	883 bp upstream