rs30071594 SNP Detail

Summary

• ID
  rs30071594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83576101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGAATT TGTATAATAG
  TTATGTATAT ATGCATGCAT TTGAGGGAAA TGGAAATGTT TTGTATAAAA CGACTATATA
  CATGTGTGAA AGTAAATACA ATGGGCCGCT ACACTGGGAC ACTAGGGATG CTGGGGCAGA
  GAGTTCCTTG TTTTACTATT GTTCTGAATC TAGAGGCATC TTCAGGTCGC CCCGAGGTTG
  Y
  GGGGACCGTC CCGCATTGTG TGCGATGCAT TTCGGCGCCC ACATGAGCCA GCGGCATCAC
  GTCTGCTGTG GGAGCTGGAT GTAGCTGTCT GTGCTGCACC AAAGAAGAAG GGTATGGTAA
  GGCGCTCTGT TGTAGCTTCA GTAGCCTTGG GTCTCCATGT TCCCCGCGAC CTTTGTTCCT
  TCCGCCTCCC AGAGTTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45889882	mCV22812582	ABI	CRAMUS_MOUSE	f	SNP	C	T			T		T
ss51353397	NES13744261	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T		T	T	C		C	T	T		T
ss133348844	ENSMUSSNP1106929	ENSEMBL	ENSEMBL_Sanger	f	SNP							T
ss321844685	CHEV_6_83549113	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30071594					SNP	C	T	T	T	T	T	T	C	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353397	NES13744261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83576101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	within coordinates
Gm7424	predicted gene 7424	1688 bp downstream
Rr632898	regulatory region 632898	716 bp distal
Rr632899	regulatory region 632899	within coordinates
Rr632900	regulatory region 632900	257 bp distal
Rr632901	regulatory region 632901	621 bp proximal