rs30071101 SNP Detail

Summary

• ID
  rs30071101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19372059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCCTCT TGGCTTTTGG
  AAGGTACTTA TCCAAACTAT AGCTGGTACC ATGACAGCAA AAGGTATACC AGAAAGCAGG
  ACCCTGAGGC CAAGGAAGCT TTCCTTAAAT GGTGACACAT TATCACAGAC CTCTATGAAT
  GAGGAAGTGA GTTAGACAAG ACCTGAGGGT TGGGAAGAGG CCTTTCCTGA ACGAGAGACC
  Y
  GGTACAGATG TCTAGTGCAT AAGTAGCTCC AAGATAGGGA GAGCCTAATA TCCAGAAGCA
  GGGCAGGCAG GCAAGCTCAG GCCACTGAAG GCCCTTGTTG GCCTGTTGGA GGACTTGTGT
  TTTCTTCTGA ACTATAATGG AAAGCCAGTG CAATATTTAC ATCTGTGCTT TGCAACAAAC
  TGGCATTCAT ATCTAATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45392781	mCV22547986	ABI	CRAMUS_MOUSE	f	SNP	C	T		C	C
ss46824883	NES10848071	PERLEGEN	MM_PANEL2	f	SNP		T	T				C	C
ss134666648	ENSMUSSNP7218716	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			C
ss320678406	CHEV_3_19217895	CHEVERUD	SCREENING_POP	f	SNP						C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30071101					SNP	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46824883	NES10848071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19372059 () rs orientation: forward

Symbol	Name	Function Class
Gm66414	predicted gene, 66414	1085 bp downstream
Rr573974	regulatory region 573974	1067 bp proximal