rs30069816 SNP Detail

Summary

• ID
  rs30069816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107509881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGACAACAA AAGTTGGCAT GCTGTTTCCC ATATTTTCTG AAGTTGTTAT TATAATTATT
  ATACTCTTGT CCAGTGCCCT TTATCTTTAA AGCCACCTAC TTCACATTGG AAAAAAAAAT
  GAATCGAGTC CAAGCTGAGT GAGAAGTGTT ATCTTATGGC TTGGTGCATT TGGTGTCTAG
  AAGCTATGCA GAAGTCAGAA AGTAGCATTG GTGTGCTGAG CTCTTCTGGG ACTTTCAAAC
  TTGGCGTTGT TGTCCTCACG ATGGAATTGA GGCATGACTA AAATAAGAGA GAGAGAGTGA
  K
  AGAGAGAGAG AGAGAAAGAG GGAGAGAGAG AGAGACATGG CTTTTCTGAG CCCACATGCC
  CCTTTGTTGT AAAAATTATC ACAGGATAGT TTTGAAATCA AACTAAGATG GCACAATATC
  ACATCTTTGA ACTGTCAAAC CATTGGCCTC CCTGGGCGAG ATCTTTATTG CACAAGTCTC
  ATGCAGGAAA GACTGAGTGA ACATTCCTTT GTAAATAAAA GCAGTAAGGT GCTTATTAGA
  AAAGATTACT CTGTTAAATA AAAGAAACAC AAGCCAGAGC CAACCACAGG AGGTAGTTCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45890552	mCV23133298	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30069816					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107509881 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636001	regulatory region 636001	931 bp distal
Rr636003	regulatory region 636003	1577 bp proximal