rs30068340 SNP Detail

Summary

• ID
  rs30068340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147977816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCATTT CCAAACAGCA
  CTGCAAATAC CTAAGAAAGC TTTTCATTCT TCATTCACTT TAAAAATACA TCCAACTCTG
  AATCTTCTTG AGTAAAATTA TTTGCACCCA GTTTTATCAT CATGTGAACC TTAATGTAAG
  CCCAGACTTA AAGGAGGGGG AAGGAGGCAG CTTATTGAAA ACTTCTTCCA TTCACAGTCT
  Y
  GGCCTGGTCA GGGCAAACAT CGTAGGTTCC TTCAAGCATT CATTCAGTTA CTTAACAAGT
  GTTTATTGAA GGTCTGTAAT ATATCAGGGT TTGTATTTAA GGTTTGAAGG TTGAAAATGA
  GATGAATGAG GGAGAGGCAT GGTCCTTATC TTGAAAAAGC ACAGGGCTGG TGTGGAGGAG
  ATTAGTGGTT AACAGATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45393243	mCV22802077	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss47037289	NES10848008	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C		C	T	T	T		T	T	T		T
ss136057893	ENSMUSSNP638711	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321014837	CHEV_3_147935144	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30068340					SNP	C	C	T	C	T	C	T	C	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47037289	NES10848008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147977816 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1783 bp upstream
Rr587183	regulatory region 587183	within coordinates
Rr587184	regulatory region 587184	390 bp proximal