rs30067090 SNP Detail

Summary

• ID
  rs30067090
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65177188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG ATGGGAAACC CATCACTTTT
  M
  TGTCTTTAAT TAGTTGAAGT GTCCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39643957	mCV22706894	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		A
ss50435842	NES13449429	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	A	C	C		C	A		C
ss147305537	ENSMUSSNP6151119	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							A
ss325655622	CHEV_18_65203771	CHEVERUD	SCREENING_POP	f	SNP													A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30067090					SNP	A	A	C	C	C	C	C	A	C	A	C	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50435842	NES13449429	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65177188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539433	regulatory region 539433			1003 bp distal
Rr539434	regulatory region 539434			105 bp distal