rs30066446 SNP Detail

Summary

• ID
  rs30066446
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119094461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATTCGTTA CACTCAGGAT ACTGCCACCC ACAAATTCCC
  TGGGCAGCTC TTGAACCCTG GGCTGTTCAT ATTTCATACC ATGAGAAGTC ACTCCATTTT
  W
  AAAATGTATT TTTAATCTAG AGAGGCCAGA CAGAGCTAAC TCTGTACATT CACTGTCTAA
  TCTTCCAAAG GTTGAATAGT CCAGGCTGCC AAAGAAATT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45891787	mCV22292891	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	A
ss133587718	ENSMUSSNP6454664	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30066446					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119094461 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			1000 bp distal
Rr637596	regulatory region 637596			1054 bp proximal