rs30066020 SNP Detail

Summary

• ID
  rs30066020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTTTTA AAAATATTCA
  TTTATTTATT TATTTATACA CTGTACACTA TAGCGGTCTT CAGACACTCC AGAAAATGGC
  ATCAGATTTC ATTACGGATG GTTGTGAGCC ACCATGTGGT TGCTGGGGTT TGAACTCGGG
  ACCTTTGGAA GAGCAGTCAG CGCTCTTAAC CGCTGAGCCA TCTCACCAGC TCCCCCCACC
  Y
  CCACTTTTTA AGTCTTAATT GGGTTGTTTT TGTTTTGATT TTGGGTTTTT GTTTTTTTGT
  TTTGTTTTTT GTTTTTGGGT TTTTTTTTTG AGACAGAGAG AGAACATACA TAAAGTTGAG
  TGAGTAGTAC GGAAGTGGGG AGGATCTGAA AGGAATTGTG GAAGGGGAAA GAATTGCTCA
  AAATGCATGT ATGGAATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45891112	mCV25134595	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss133241395	ENSMUSSNP320985	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30066020					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	1255 bp distal
Cpgi17484	CpG island 17484	648 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	1047 bp upstream
Rr399669	regulatory region 399669	797 bp downstream
Rr631141	regulatory region 631141	1100 bp distal
Rr631142	regulatory region 631142	599 bp distal
Tssr61156	transcription start site region 61156	1120 bp upstream
Tssr61157	transcription start site region 61157	1094 bp upstream
Tssr61158	transcription start site region 61158	1068 bp upstream
Tssr61159	transcription start site region 61159	1018 bp upstream
Tssr61160	transcription start site region 61160	1002 bp upstream