rs30065375 SNP Detail

Summary

• ID
  rs30065375
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18433384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAAGTGT TGGAAGACAA
  TACCTTCTCC AAAGAGGTAC ATGCCATTCC AACTAAACTA AGCTTGTAAC TGAGATTTAT
  AAATATTCAG GGCGAGAAAG GGACATTCAT ACCAAACTGA AAGGAATCTT CAGAATCTAT
  TAATTACAGA ATAAACCCCA TCAACCTGCT AATCTAGAGT TATACAAACA GTGACTTGGT
  R
  GGATTTTTCT TAAGCCACCC TAAAAGGACC AAACTGAAAG CCCACTGAGG ATGATCCATT
  AATAGTGAGG TCTTGCGAGA TAAATATTTA ATAGGAAGGG ATACTCTTTC CTCCCCTGGA
  AATGTTTCAG TCTCTCTTAA ATTAATGGTC TCCATGGACT TCAACCCACT ATTTTCAGGT
  TATTTTCAAG AAAAGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45890607	mCV23958992	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss133034757	ENSMUSSNP4527164	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30065375					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18433384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm67618	predicted gene, 67618			1652 bp upstream
Rr626922	regulatory region 626922			1162 bp proximal
Rr626923	regulatory region 626923			1357 bp proximal