rs30064790 SNP Detail

Summary

• ID
  rs30064790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141687808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA ATTTCCTTTT AGAACAAAAA
  Y
  GCTCAAAATT CAAGTTCTCG CCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45392314	mCV23581134	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss136009114	ENSMUSSNP5335800	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320997335	CHEV_3_141645011	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30064790					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141687808 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bmpr1b	bone morphogenetic protein receptor, type 1B			Intron
				mRNA-UTR
Rr586376	regulatory region 586376			32 bp distal
Rr586377	regulatory region 586377			74 bp proximal
Rr586378	regulatory region 586378			207 bp proximal
Tssr35923	transcription start site region 35923			159 bp downstream
Tssr35924	transcription start site region 35924			177 bp downstream