rs30064742 SNP Detail

Summary

• ID
  rs30064742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86715256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACGCTAAG TCAGAAAACC TACTAGAAAA TGACCCCTGA
  CTGCTGCCAC AGAGTAAGGC TTTGTGTATG CTCTGACTCC TGGCTTCACT TCAGTCCTTG
  S
  AGATGGGAGT GTAAGCCCAG TATTCCCGCC TCTAAGCCCA CATCTCTCAT ACTGGACATC
  ACTGTGAAAG GGGAACGGCT GAGAAACTCA AGCTGGAAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45392070	mCV24907537	ABI	CRAMUS_MOUSE	f	SNP		G	G				G		C
ss46735865	NES10753118	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	C	C		G	C	G	C		G	G	G	G		G
ss135449095	ENSMUSSNP854914	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						C
ss320829817	CHEV_3_86611871	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30064742					SNP	G	G	G	C	C	C	G	G	C	G	C	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735865	NES10753118	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86715256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			within coordinates
Rr579388	regulatory region 579388			299 bp proximal
Rr579389	regulatory region 579389			1301 bp proximal