rs30064680 SNP Detail

Summary

• ID
  rs30064680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27254789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTCTGT TGTTTAGATC
  TAGTTGCTTT TTGTTGTCAG CAAAGACGTC ATAATAAATC TGTCCTGCTG GACCCCTAGT
  CTGTTGCTTC AAGAAGTCAT TCTTTGCTGG AGAGATGGCT CAGCAGGTAA GAGCACTAAC
  TGCCCTTCCA AATGTCATGA GTTCAAATCC CAGCAACCAC ATGGTGGCTC ACAACAATAC
  R
  TAATAAGATC TGACGCCCTC TTCTGGTGTG TCTGAAGACA GCTACCATGT ACTTAGATAT
  AATAATAAAT AAAACTTTAA AAAAAAAAAA AAGAAGTCAT ACTTTGTTTA GACTTTGAAC
  CAAACACTGA AATTGTTGGT TGCTGTGGCG TCTTCCGTGC TCACCAGAAG AATGAACCTG
  TGGACAGAGA GCAGGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45392905	mCV24689998	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss134702704	ENSMUSSNP1339925	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30064680					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27254789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			1122 bp proximal