rs30064322 SNP Detail

Summary

• ID
  rs30064322
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131794628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCATGCAC AAGAGAGAGA GAGAGATCTA GAACAGCCTT
  GTTGGTGCCC AGAATTTCAG TTGAGGGGAC TGAAAGCTAA GTGCCAATTG ATGAAAGCAG
  Y
  TGTTTATATA GTACCACCCA AGGTCTAAGA CGTTCAGCTC TGTCCACCAC TCTCAGTTGT
  GAATGATGAC TTTAAAATAT CTGTTTTAAA GACCCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45391875	mCV23619654	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135908777	ENSMUSSNP3289496	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320968642	CHEV_3_131751831	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30064322					SNP	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131794628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13842	CpG island 13842	1301 bp distal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	Intron
Rr585413	regulatory region 585413	1106 bp distal
Rr585414	regulatory region 585414	1666 bp distal
Rr585415	regulatory region 585415	1400 bp distal