rs30062870 SNP Detail

Summary

• ID
  rs30062870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116760496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAATTT TAACAGTGAA
  AGTATCTCTA TATTCAGGAA CCTGCCTACC TACTCAATTC CTTTTAAGGC ATTTTGATCT
  TCTATATCTA ATTGCACCTG AAGCCTCAGT GAAAATTCCT TGGCTTTCTG AATAACTCTC
  AGCCGCCATC TACTTGGACC ATGCCCTAGT TCACTAAATG CTCTAAGCTG CAAACCACAC
  W
  TAGCAAGACC TTAAAATAAG ATGTTCCCCA GTTCAGTAGC AGAGACACAG AAGAAGGTGT
  CTGTGTGCAT CACCGAGTCA ACTGTTTCAT TTGGTTATCC GGGAGGTAAA GCCGTGGGGA
  GAAATGGAAC CTAGTTGTGA GCGACTCACA CGGCCCAGTG AAGTAACCTT TAGCCAACAG
  CTGTAATGTG AAAGGGCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45392391	mCV23495020	ABI	CRAMUS_MOUSE	f	SNP		A					T		T
ss60435459	NES15933246	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T		A		T	T	A	T	A	T
ss135676592	ENSMUSSNP4446529	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30062870					SNP	A	A	T	T	T	T	T	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435459	NES15933246	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116760496 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			1420 bp upstream
Cpgi13743	CpG island 13743			1746 bp proximal
Gm52613	predicted gene, 52613			347 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			212 bp distal
Rr583815	regulatory region 583815			within coordinates
Rr583816	regulatory region 583816			40 bp distal
Rr583817	regulatory region 583817			1330 bp proximal
Tssr35360	transcription start site region 35360			1691 bp downstream
Tssr35361	transcription start site region 35361			1716 bp downstream
Tssr35362	transcription start site region 35362			1781 bp downstream
Tssr35363	transcription start site region 35363			1829 bp downstream
Tssr35364	transcription start site region 35364			1865 bp downstream
Tssr35365	transcription start site region 35365			1925 bp downstream
Tssr35366	transcription start site region 35366			1943 bp downstream
Tssr35367	transcription start site region 35367			1980 bp downstream