rs30061588 SNP Detail

Summary

• ID
  rs30061588
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87082770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GGTGCACTGG GGTGAAGACA
  W
  GGAGAATCGA AATAGAAGTG CATTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45391743	mCV24904420	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss135455082	ENSMUSSNP6605698	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss320831255	CHEV_3_86979385	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30061588					SNP	A	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87082770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	426 bp distal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	716 bp upstream
Rr579455	regulatory region 579455	1296 bp distal
Rr579456	regulatory region 579456	924 bp distal
Rr579457	regulatory region 579457	226 bp distal
Rr579458	regulatory region 579458	276 bp proximal
Rr579459	regulatory region 579459	362 bp proximal
Tssr33927	transcription start site region 33927	978 bp upstream
Tssr33928	transcription start site region 33928	885 bp upstream
Tssr33929	transcription start site region 33929	808 bp upstream
Tssr33930	transcription start site region 33930	784 bp upstream