rs30060436 SNP Detail

Summary

• ID
  rs30060436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26325088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT ACTTGACATT TACATTTTTT
  W
  AAAAAATGAA GCCTTTAGAT CAAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45390075	mCV22681047	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss134692894	ENSMUSSNP4757457	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320687002	CHEV_3_26169861	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30060436					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26325088 () rs orientation: forward

Symbol	Name	Function Class
Nlgn1	neuroligin 1	Intron
Rr574313	regulatory region 574313	92 bp proximal