rs30059428 SNP Detail

Summary

• ID
  rs30059428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50586878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGAATT CCATTCATTC
  TTGATCTACA CACAAAATTG CAGTGTGAGA CCATTCATGA AGATGGCTAT GAGAGGAGAG
  AGATAGCTCA CATAGTATGC AGTTGGAACC CACTGCCTAC CTGTATTCAG CTCATGAGAA
  TCCCATCAGG GCATTCAGCA ACACCTTTAG TGGTCTGTTA CAGAAATTCT ATTTCTCTAA
  M
  GACAGATCAT TTAAATAAAC AATTAAAATT CTTTAGTTTT CAGCCAATAA TCAATTAGTT
  AAAAGTACCA GCCAGAATGG CATTCTAACC TGTTTTTTCT ATTACTTTAT CTCTCATTTC
  CTGGCTCCTC TTCCTTAATT AAAATTTCCT AACACTCCCA CATTCTCTTC TCTCTGGGCT
  CCACATCCAG GAGAGAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49595975	NES12916000	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30059428					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595975	NES12916000	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50586878 () rs orientation: forward

Symbol	Name	Function Class
Rr576164	regulatory region 576164	1931 bp proximal