rs30059426 SNP Detail

Summary

• ID
  rs30059426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50587150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGGGCTC CACATCCAGG AGAGAAAAAT GAACACCCTT
  CCATCTCTGA GAACATATTT TAAATGTACA TAATTAAGAC TAAAAATGAA AAAAAAATCA
  Y
  ATAACAAAGG CTTATAGAAC CAAGTGTCGT GGTTACAAGA TTCACCAACA CATGTGCACA
  TGACCTTTGA CGTTCTGTGC TTTTGACTTT CCTAACTCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49595973	NES12916002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30059426					SNP	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595973	NES12916002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50587150 () rs orientation: forward

Symbol	Name	Function Class
Rr576164	regulatory region 576164	1659 bp proximal