rs30058901 SNP Detail

Summary

• ID
  rs30058901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78875433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTT TCGGGCTCCA GACATCCAGG
  Y
  ACCATCCCTG CCAGAGGAAA GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45392002	mCV24563806	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss135365565	ENSMUSSNP3808734	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320809400	CHEV_3_78772048	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30058901					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78875433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	823 bp distal
Gm9762	predicted pseudogene 9762	1327 bp upstream
Gm65474	predicted gene, 65474	1384 bp downstream
Gm66687	predicted gene, 66687	1277 bp upstream
Rr578453	regulatory region 578453	1309 bp distal
Rr578454	regulatory region 578454	808 bp distal