rs30058726 SNP Detail

Summary

• ID
  rs30058726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50396114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA AGTTCTCTAG GTTCGTAAAG
  Y
  AATCTCTTCA TAGATCTTTC TATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45423881	mCV22771266	ABI	CRAMUS_MOUSE	f	SNP							T		C
ss49596952	NES12918575	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T		T	C	C	C		T	C	T	T		C
ss135160732	ENSMUSSNP4366441	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss320757849	CHEV_3_50245587	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30058726					SNP	T	C	C	C	T	T	T	T	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49596952	NES12918575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50396114 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	760 bp upstream
Rr576159	regulatory region 576159	1936 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	1847 bp upstream
Tssr33166	transcription start site region 33166	606 bp downstream
Tssr33167	transcription start site region 33167	1047 bp downstream
Tssr33168	transcription start site region 33168	1751 bp downstream
Tssr33169	transcription start site region 33169	1791 bp downstream
Tssr33170	transcription start site region 33170	1818 bp downstream
Tssr33171	transcription start site region 33171	1847 bp downstream
Tssr33172	transcription start site region 33172	1874 bp downstream
Tssr33173	transcription start site region 33173	1913 bp downstream
Tssr33174	transcription start site region 33174	1938 bp downstream