rs30058724 SNP Detail

Summary

• ID
  rs30058724
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50396252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT AAAGTATCAC AAGACCTGGA
  R
  TGAAAGAAGG AATGGAACAA GAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45519888	mCV22771277	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss49596950	NES12918577	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	G	G	G		A	G	A	A		G
ss320757851	CHEV_3_50245725	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30058724					SNP	A	A	G	G	G	A	A	A	A	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49596950	NES12918577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50396252 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	622 bp upstream
Rr576159	regulatory region 576159	1798 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	1709 bp upstream
Tssr29027	transcription start site region 29027	1944 bp upstream
Tssr33166	transcription start site region 33166	468 bp downstream
Tssr33167	transcription start site region 33167	909 bp downstream
Tssr33168	transcription start site region 33168	1613 bp downstream
Tssr33169	transcription start site region 33169	1653 bp downstream
Tssr33170	transcription start site region 33170	1680 bp downstream
Tssr33171	transcription start site region 33171	1709 bp downstream
Tssr33172	transcription start site region 33172	1736 bp downstream
Tssr33173	transcription start site region 33173	1775 bp downstream
Tssr33174	transcription start site region 33174	1800 bp downstream
Tssr33175	transcription start site region 33175	1975 bp downstream