rs30058656 SNP Detail

Summary

• ID
  rs30058656
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60380832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCGTAGT CCTGTTGCTT
  TGTCAATAAT ATAATGATAT GGATGCTGCC CAAATTACAA AGTAGCCTGT GGAAGCCTCT
  CATGTAAATA GTAAATTTTT TTAAATGACA AAAGTTTAAC TGGTTTTAAC CTCACATTTA
  AGCTTTTAAT AAGCTGCAAA CAAAATTAAG TTCTTTTTGA TCTGAAAGTT ACGTTAGCTG
  M
  AAAATAAAAT TCTGTCTTCC TTATTTGTAG GTAACCCTCC ACACAGCTAA CTCTAGTATA
  AACATTTGTG TTATTTATAA ATTTGAATGT TTATATTTTC CTCCTACAAG TTGATTTCTG
  ACATTCATAA ATCCTCTCAC GTCTCTTTTA TTCTTTTTAT GTTTTATTTA TTGAACATTT
  TTTCCTTAAA AATTCTATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45389679	mCV23098298	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		C
ss46983749	NES10785498	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C		C	C	C	C	C	C	C	C	C
ss135219200	ENSMUSSNP5025528	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30058656					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983749	NES10785498	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60380832 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	962 bp downstream
Rr577397	regulatory region 577397	322 bp distal
Rr577398	regulatory region 577398	within coordinates
Rr577399	regulatory region 577399	188 bp proximal
Tssr29248	transcription start site region 29248	1205 bp downstream
Tssr29249	transcription start site region 29249	1178 bp downstream
Tssr29250	transcription start site region 29250	803 bp downstream
Tssr29251	transcription start site region 29251	745 bp downstream
Tssr29252	transcription start site region 29252	724 bp downstream
Tssr29253	transcription start site region 29253	670 bp downstream
Tssr29254	transcription start site region 29254	625 bp downstream
Tssr29255	transcription start site region 29255	605 bp downstream
Tssr29256	transcription start site region 29256	595 bp downstream
Tssr29257	transcription start site region 29257	574 bp downstream
Tssr29258	transcription start site region 29258	328 bp downstream
Tssr29259	transcription start site region 29259	283 bp downstream
Tssr29260	transcription start site region 29260	1998 bp upstream