rs30058593 SNP Detail

Summary

• ID
  rs30058593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152656360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCATCA CTTAGAGAAG
  CCAAGGTAGG ACATCAGTGC AGGAACCCGG AAGCAGACCT TAAACTGGAG CCTGTATAAA
  GGTGCTGCTC ACTGGCTGGC TCGCTCAGTT TGATTTCTAA TACCATCCAG GACCAAGTGG
  AGCACCATGC ACCATGGACT GGACCCTCTC ACATTCACTA ATGAAGAAAA TGCATTCCCG
  Y
  AACTGAGAGC CTTTCCCAAA TGACTCTGCC TTGTGTGTCA AGTTGACAAA GCCTAACGAA
  CATACAGGGT AGCCAGGGAG AGATACCAGA TGATTTTGGA GGCTGACATA GTAATTATCT
  TTATTTTTCT CCTGTTGCTA TGATAAGTTA CCCTGAGAAA AGCAACCTAA GAGAGAAGGG
  TTTGTTTTCG CTCACAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45390351	mCV24026541	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136105125	ENSMUSSNP5717356	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321029349	CHEV_3_152613687	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30058593					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152656360 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	133 bp distal
Rr587635	regulatory region 587635	382 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron