rs30058197 SNP Detail

Summary

• ID
  rs30058197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126391559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGAATTT ATGATCTCTG
  CAGTTGTAGC TGTCATCCTG AGAAGTGTGC GCGCACGCGA GTGCGAATGT GTGTGTATGT
  GTGTTCGGAG AGGAAAGGAG ATGCATGTAA AATGCAACAT TTATCACATT TTTGGTAAAT
  AGATGTCTCT TGCTCAGCCC GCGCTGTATC TGCGATCTGA CCCAGGTTCG GATGAGCTAA
  Y
  GAGAGAACAC TCGCTCTCTG AGATGGTGCC ATATTTATCG ATGCCGAAAG TTCAACTTGG
  CTTGGTGGAG AGTCTGGTTC GGCATCCAAG TAGTTGTTCC GTTCAGGAAA AGGGCCACCC
  AACAGAACCC ACGTCCCTGC CATGTATCCG CTATCCTTCT TTGCACTAAG ATGAGTCGCT
  CACCATCATT CTAGGATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45390831	mCV24012044	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135836844	ENSMUSSNP2815857	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320946584	CHEV_3_126300828	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30058197					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126391559 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Cpgi13785	CpG island 13785			within coordinates
Gm17225	predicted gene 17225			within coordinates
Rr367547	regulatory region 367547			1446 bp downstream
Rr397994	regulatory region 397994			1376 bp upstream
Rr584646	regulatory region 584646			486 bp distal
Rr584647	regulatory region 584647			1003 bp distal
Rr584648	regulatory region 584648			891 bp distal
Rr584649	regulatory region 584649			within coordinates
Rr584650	regulatory region 584650			1452 bp proximal
Tssr31566	transcription start site region 31566			1567 bp downstream
Tssr31567	transcription start site region 31567			1538 bp downstream
Tssr31568	transcription start site region 31568			1491 bp downstream
Tssr31569	transcription start site region 31569			1056 bp downstream
Tssr31570	transcription start site region 31570			924 bp downstream
Tssr31571	transcription start site region 31571			872 bp downstream
Tssr31572	transcription start site region 31572			797 bp downstream
Tssr31573	transcription start site region 31573			656 bp downstream
Tssr31574	transcription start site region 31574			497 bp downstream
Tssr31575	transcription start site region 31575			475 bp downstream