rs30058135 SNP Detail

Summary

• ID
  rs30058135
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119093612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTCTGC CCACATGTAT
  GCCTACACAT CACCAGAAGA GGGCACCAGA TCTCATTATG GATGGTTGTA AGCCACCATA
  TGGTTGCTAG GAATTGACCT CAGGGTCTCT AGAAGAACAG CCAGTACTTT TAACATCTGA
  GCCACCTCTC CAGCCCCGAA CTTTCTGTAT TTGTGAAGGG ATGATAGAAA GGGTGTCTGC
  M
  GTGCTTCTGC TGCGGTGACA TTACACAATG ACTAAAGGCA GCTCCGGAGG GACGGGTTTT
  ATTTGGATTA TGGTTCCAGA GGAACAAAGT CCATCATGGG GGAAGGCATG GCTGAGAAGC
  AGGAACAGGA GGCTGAGCGG TCGCATCTTT AACAGCAAGC AGAAAGAATC AATGGGAAGT
  AGGGAGGGGC TGCTTGCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45889397	mCV22292873	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss133587700	ENSMUSSNP3842753	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30058135					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119093612 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			151 bp distal
Rr637596	regulatory region 637596			1903 bp proximal