rs30057783 SNP Detail

Summary

• ID
  rs30057783
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50398067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGT GGAAGGCTCC GTATTTAAGC
  W
  ACCGCCTGTC ACACCAACTT ACTGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45417895	mCV22771300	ABI	CRAMUS_MOUSE	f	SNP	A	T				A
ss49596949	NES12918578	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		T	T	T		A	T		T
ss135160744	ENSMUSSNP6631912	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320757854	CHEV_3_50247540	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30057783					SNP	A	T	T	T	T	A	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49596949	NES12918578	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50398067 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	992 bp downstream
Rr576159	regulatory region 576159	within coordinates
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	78 bp downstream
Tssr29027	transcription start site region 29027	129 bp upstream
Tssr33166	transcription start site region 33166	1328 bp upstream
Tssr33167	transcription start site region 33167	904 bp upstream
Tssr33168	transcription start site region 33168	195 bp upstream
Tssr33169	transcription start site region 33169	153 bp upstream
Tssr33170	transcription start site region 33170	122 bp upstream
Tssr33171	transcription start site region 33171	98 bp upstream
Tssr33172	transcription start site region 33172	69 bp upstream
Tssr33173	transcription start site region 33173	26 bp upstream
Tssr33174	transcription start site region 33174	3 bp upstream
Tssr33175	transcription start site region 33175	160 bp downstream