rs30057721 SNP Detail

Summary

• ID
  rs30057721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50590476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGCCCC CCCCCGTACA
  CACAGACACA CACACATACA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAATAT ACTCTACTTC AAATATACCT CTTCCCTTAA ACCAGTTACT
  ACTGTGGTTA TAATTGGTCT TTATATCACA CTATAATTTC TTTCAATGTT CCAATTCTAT
  Y
  AGCACATCCT CTTAGCTCCC CAAAAGTTAA ATCTAAACAT ACTAAGAGTT ATCAAATAAA
  TCACTGGAAA AAATTCCAAA GTTCAACTCA AATGTAATAT TTGGACCTTA TTAGTTATTT
  TAATAACATT TTATAAATTT TTATTTTTTC TTTTTTATTA GATATTTTCT TCATTTACAT
  TTCAAATGCT ATCCCCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49595958	NES12915976	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30057721					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49595958	NES12915976	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50590476 () rs orientation: forward

Symbol	Name	Function Class
Rr576164	regulatory region 576164	862 bp distal
Tssr33183	transcription start site region 33183	1396 bp downstream