rs30057352 SNP Detail

Summary

• ID
  rs30057352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86988262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGACTCA AAGTACCAAC
  ATGCTGGAAG ATGCTAGCTT CAGACGGAAG AGCCTCGTGA TTAAGGGACT TTCAACTCCC
  CCGACAAGCA ACACTGGTCA TTCAGCAGGG CCCAACTCTG ATTCTGATTG CGGAGTGTGA
  GTGGCAGGAG TCTGTCTCAG TTGCTGTTTC CTGTCCCTCG CATGGCTGTG CGCTTGACTC
  Y
  CAGAGTTCTC CTTAGTGCTG CTCTTATTTC CATAGGAGGG ACCTACTACT TAAATCAGAG
  AGAAACAAGA GAATCAAGCC AAACCCCACA CAAGATGATG ACTTTAGGGA GTATAAAATG
  CCACTCTATT TAGACTTCAG AAGTGTTTGG CTCACCCACG GCTTCAGAGG TCAGAGAACA
  TGAAAGCCTG TATGAATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45390438	mCV24905800	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss46738292	NES10744921	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	C	T
ss135453676	ENSMUSSNP5884161	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30057352					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46738292	NES10744921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86988262 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	mRNA-UTR
Rr579434	regulatory region 579434	1363 bp proximal
Rr579435	regulatory region 579435	1448 bp proximal