rs30056221 SNP Detail

Summary

• ID
  rs30056221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27245730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAATGGGTT AACCCTTTGA ACTGTAAGCC CCAATTAAAT ATTTTCCACT ATAAGAGTTG
  CTGAGGTCCT GGTGTCTCTT CACAGTAATC AAACAGGCAT CAACGACAAG CCAAAGAAAC
  CATTCCGCCC AAGGGTTGCT TTGTGAACCC TTTGTGACCC CTATGAGTCT AGTGTATACA
  TGAGTATGTT ACGGGAACAT GGGTAACTCA AAGGCAGTAT GTCATAGAAA AGCCCACTCC
  GGCATGGGTG ATGCTGTCCT GGCCTCCAGC AGAGAGTCAC CGATCCCAGC CATTATTAAC
  Y
  TGTATTCCCA TGGGGGGGAG TGTGTGTGCA AATTTTATGA ATTTTGTACC TTTCATGAGC
  TTCCTGGGCT TTAGAAACCT TCCTGGGAAG TTTCAATTAG CACAACAAGA ACTGGCTACA
  CAACAAGAGT TGCCAGCTGA ATGAGATGTG AGGGGCCATC TGATAGTAAC CGGGGCTATA
  CTCAAATGAC AGAGCATAAG TTACAGATGG GGCTTTTATG GAGCCCACAA AAGAACACCA
  GACACAGACC TGGAGTCAGG GCTAGGTGGT ACACACCTGT AATACCAGCA CTGGAGAGGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45389857	mCV27552812	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss134702626	ENSMUSSNP3547165	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30056221					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27245730 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			375 bp downstream
Rr574360	regulatory region 574360			1377 bp distal
Rr574361	regulatory region 574361			349 bp distal
Rr574362	regulatory region 574362			280 bp proximal
Tssr28610	transcription start site region 28610			551 bp upstream
Tssr32839	transcription start site region 32839			349 bp downstream
Tssr32840	transcription start site region 32840			393 bp downstream