rs30056008 SNP Detail

Summary

• ID
  rs30056008
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68949862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG AGAATTGCTA TGATTATGCC
  W
  TTTATATACT ACCATAAGAC AAAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45390812	mCV25211968	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss135264673	ENSMUSSNP1311140	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320791796	CHEV_3_68846451	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30056008					SNP	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68949862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1532 bp proximal
Rr578116	regulatory region 578116	891 bp distal
Rr578117	regulatory region 578117	within coordinates
Rr578118	regulatory region 578118	1363 bp proximal
Trim59	tripartite motif-containing 59	Intron